Secondary Structure

Murlet: a practical multiple alignment tool for structural RNA sequences

Bioinformatics / Algorithms / RNA / Biological Sciences / Software / Sequence alignment / Mathematical Sciences / Efficient Algorithm for ECG Coding / Secondary Structure / Protein Secondary Structure Prediction / Source Code / Multiple Sequence Alignment / Base Sequence / Molecular Sequence Data / Sequence alignment / Mathematical Sciences / Efficient Algorithm for ECG Coding / Secondary Structure / Protein Secondary Structure Prediction / Source Code / Multiple Sequence Alignment / Base Sequence / Molecular Sequence Data

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Probabilistic structural alignment of RNA sequences

Speech Acoustics / Free Energy / Secondary Structure / Protein Secondary Structure Prediction / RNA Secondary Structure / Prediction Accuracy

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Probabilistic structural alignment of RNA sequences

Speech Acoustics / Free Energy / Secondary Structure / Protein Secondary Structure Prediction / RNA Secondary Structure / Prediction Accuracy

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RNA structural features responsible for potato spindle tuber viroid pathogenicity

Thermodynamics / Virology / Potato / Biological Sciences / Plant viruses / Secondary Structure / Viroids / Structural Properties / Three Dimensional / Genetic variation / Solanum Tuberosum / RNA Structure / Base Sequence / Structure activity Relationship / Nucleic Acid Conformation / Nucleotides / Melting Temperature / Molecular Sequence Data / Secondary Structure / Viroids / Structural Properties / Three Dimensional / Genetic variation / Solanum Tuberosum / RNA Structure / Base Sequence / Structure activity Relationship / Nucleic Acid Conformation / Nucleotides / Melting Temperature / Molecular Sequence Data

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A Conserved N-Terminal Sequence Targets Human DAP3 to Mitochondria

Caenorhabditis elegans / Mitochondria / Apoptosis / Drosophila / Cell line / Humans / Sequence alignment / Mice / Animals / Ribosomal proteins / Programmed cell death / Biochemical / Proteins / Gene Structure / Secondary Structure / Protein Secondary Structure Prediction / Transfection / Amino Acid Sequence / Structure Function / Fusion Protein / Biochemistry and cell biology / Software Package / Molecular Sequence Data / Humans / Sequence alignment / Mice / Animals / Ribosomal proteins / Programmed cell death / Biochemical / Proteins / Gene Structure / Secondary Structure / Protein Secondary Structure Prediction / Transfection / Amino Acid Sequence / Structure Function / Fusion Protein / Biochemistry and cell biology / Software Package / Molecular Sequence Data

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Autonomous programmable DNA nanorobotic devices using DNAzymes

Robotics / Design / RNA / Behavior / Routing / Self Assembly / Theoretical Computer Science / Molecular Computing / DNA / Molecular / Transition / Conception / Finite State Automaton / Mathematical Sciences / ROBOT / Nanostructure / Transduction / Lattice / Enzyme / Mathematical Model / Secondary Structure / Finite State Automata / Autonomous / Biomolecular / Probabilistic Automata / Stochastic Model / Cycle / Computer / Nucleic Acid / Self Assembly / Theoretical Computer Science / Molecular Computing / DNA / Molecular / Transition / Conception / Finite State Automaton / Mathematical Sciences / ROBOT / Nanostructure / Transduction / Lattice / Enzyme / Mathematical Model / Secondary Structure / Finite State Automata / Autonomous / Biomolecular / Probabilistic Automata / Stochastic Model / Cycle / Computer / Nucleic Acid

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A Conserved N-Terminal Sequence Targets Human DAP3 to Mitochondria

Caenorhabditis elegans / Mitochondria / Apoptosis / Drosophila / Cell line / Humans / Sequence alignment / Mice / Animals / Ribosomal proteins / Programmed cell death / Biochemical / Proteins / Gene Structure / Secondary Structure / Protein Secondary Structure Prediction / Transfection / Amino Acid Sequence / Structure Function / Fusion Protein / Biochemistry and cell biology / Software Package / Humans / Sequence alignment / Mice / Animals / Ribosomal proteins / Programmed cell death / Biochemical / Proteins / Gene Structure / Secondary Structure / Protein Secondary Structure Prediction / Transfection / Amino Acid Sequence / Structure Function / Fusion Protein / Biochemistry and cell biology / Software Package

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Structural Analysis of Adeno-Associated Virus Transduction Circular Intermediates

Virology / Sequence Analysis / Biological Sciences / Cell line / Adeno-associated virus / Structure Analysis / Secondary Structure / Structural Similarity Index / single stranded DNA / Structure Analysis / Secondary Structure / Structural Similarity Index / single stranded DNA

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Purified promyelocytic leukemia coiled-coil aggregates as a tetramer displaying low α-helical content

Chromatography / Transcription Factors / Sequence Analysis / Humans / Circular Dichroism / Peptides / Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis / Affinity chromatography / High Pressure Liquid Chromatography / Protein expression and purification / Protein Complex Detection / Secondary Structure / Protein Secondary Structure Prediction / Time Factors / Heptad Repeat / Amino Acid Profile / Glutathione Transferase / Amino Acid Sequence / Fusion Protein / Acute Promyelocytic Leukemia / Biochemistry and cell biology / Peptides / Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis / Affinity chromatography / High Pressure Liquid Chromatography / Protein expression and purification / Protein Complex Detection / Secondary Structure / Protein Secondary Structure Prediction / Time Factors / Heptad Repeat / Amino Acid Profile / Glutathione Transferase / Amino Acid Sequence / Fusion Protein / Acute Promyelocytic Leukemia / Biochemistry and cell biology

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How do potentials derived from structural databases relate to “true” potentials?

Algorithms / Protein Folding / Protein Science / Protein structure / Proteins / Knowledge base / Amino Acids / Secondary Structure / Protein Secondary Structure Prediction / Biochemistry and cell biology / Boltzmann distribution / Knowledge base / Amino Acids / Secondary Structure / Protein Secondary Structure Prediction / Biochemistry and cell biology / Boltzmann distribution

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Assembly of protein structure from sparse experimental data: An efficient Monte Carlo model

Algorithms / Protein Folding / Monte Carlo / Membrane proteins: Structure and Function / Biological Sciences / Computer Simulation / Mathematical Sciences / Long Range / Protein structure / Proteins / Hydrogen Bond / Secondary Structure / Protein Secondary Structure Prediction / Protein Conformation / Experimental Data / Force Field Analysis / Center of Mass / Monte Carlo Method / Computer Simulation / Mathematical Sciences / Long Range / Protein structure / Proteins / Hydrogen Bond / Secondary Structure / Protein Secondary Structure Prediction / Protein Conformation / Experimental Data / Force Field Analysis / Center of Mass / Monte Carlo Method

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Circular dichroism analysis of penicillin G acylase covalently immobilized on silica nanoparticles

Engineering / Kinetics / Mass Spectrometry / Nanoparticles / Circular Dichroism / Silica / Physical sciences / Structural Change / Enzyme / CHEMICAL SCIENCES / Secondary Structure / X ray diffraction / Particle Size / Specific Activity / Surface Properties / Enzyme activity / Molecular Mass / Silicon Dioxide / Molecular Structure / Silica / Physical sciences / Structural Change / Enzyme / CHEMICAL SCIENCES / Secondary Structure / X ray diffraction / Particle Size / Specific Activity / Surface Properties / Enzyme activity / Molecular Mass / Silicon Dioxide / Molecular Structure

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Fmoc-protected iminosugar modified asparagine derivatives as building blocks for glycomimetics-containing peptides

Organic Chemistry / Multiple sclerosis / Glycopeptide Research / Humans / Statistical Significance / Peptides / Liquid Chromatography / Electrospray Ionization Mass Spectrometry / Secondary Structure / Antibody / Molecular Mimicry / Protein Conformation / Bioorganic and medicinal Chemistry / Asparagine / Chemical Synthesis / Enzyme Linked Immunosorbent Assay / Autoantibodies / Peptides / Liquid Chromatography / Electrospray Ionization Mass Spectrometry / Secondary Structure / Antibody / Molecular Mimicry / Protein Conformation / Bioorganic and medicinal Chemistry / Asparagine / Chemical Synthesis / Enzyme Linked Immunosorbent Assay / Autoantibodies

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Phenomenological partial-specific volumes for G-quadruplex DNAs

DNA / Humans / Secondary Structure / Telomere / Molecular weight / Base Sequence / Sodium Chloride / Potassium Chloride / Nucleic Acid Conformation / Nucleotides / Nucleic Acid / Base Sequence / Sodium Chloride / Potassium Chloride / Nucleic Acid Conformation / Nucleotides / Nucleic Acid

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CKAAPs DB: a Conserved Key Amino Acid Positions DataBase

Algorithms / Relational Database / Protein Folding / Protein Engineering / Structural Stability / Biological Sciences / Environmental Sciences / Sequence alignment / Text Analysis / Animals / Gene ontology / Peptides / Nucleic Acids / Proteins / Theoretical Analysis / Enzyme / Computer User Interface Design / Information Storage and Retrieval / Secondary Structure / Protein Secondary Structure Prediction / Amino Acid Profile / Protein Conformation / Amino Acid Sequence / Structure activity Relationship / Structural Similarity Index / Internet / Protein Data Bank / Nucleic Acid / Web Interface / Biological Sciences / Environmental Sciences / Sequence alignment / Text Analysis / Animals / Gene ontology / Peptides / Nucleic Acids / Proteins / Theoretical Analysis / Enzyme / Computer User Interface Design / Information Storage and Retrieval / Secondary Structure / Protein Secondary Structure Prediction / Amino Acid Profile / Protein Conformation / Amino Acid Sequence / Structure activity Relationship / Structural Similarity Index / Internet / Protein Data Bank / Nucleic Acid / Web Interface

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Local Alignment Refinement Using Structural Assessment

Engineering / Algorithms / Physics / Chemistry / Biology / Medicine / Multidisciplinary / Homology Modeling / Humans / Sequence alignment / Animals / Proteins / PLoS one / Protein Sequence Analysis / Local Alignment / Secondary Structure / Three Dimensional / Amino Acid Sequence / Physico chemical Properties / Force Field Analysis / Molecular Sequence Data / Medicine / Multidisciplinary / Homology Modeling / Humans / Sequence alignment / Animals / Proteins / PLoS one / Protein Sequence Analysis / Local Alignment / Secondary Structure / Three Dimensional / Amino Acid Sequence / Physico chemical Properties / Force Field Analysis / Molecular Sequence Data

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